I assume that you are using some kind of browser-based computing environment (e.g. Google Colab, Jupyter Notebook, etc.). Our wrapper amirispy is currently only tested on the system console.
If you cannot use the console of your system, you may use the following three commands (after you have executed the amiris install command) as a workaround to
1. compile your scenario input.pb
!makeFameRunConfig -f scenario.yaml -o input.pb
2. execute AMIRIS
!java -cp amiris-core_1.2.3.4-jar-with-dependencies.jar -Dlog4j.configuration=file:log4j.properties de.dlr.gitlab.fame.setup.FameRunner -f input.pb -s fameSetup.yaml
3. convert the results to human-readable csv files
!convertFameResults -f output.pb
As always, adapt the paths in the commands if necessary.